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SDR16C6P short chain dehydrogenase/reductase family 16C member 6, pseudogene [ Homo sapiens (human) ]

Gene ID: 442388, updated on 13-May-2022

Summary

Official Symbol
SDR16C6Pprovided by HGNC
Official Full Name
short chain dehydrogenase/reductase family 16C member 6, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:35413
See related
Ensembl:ENSG00000253542 AllianceGenome:HGNC:35413
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SDR16C6
Expression
Low expression observed in reference dataset See more
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Genomic context

See SDR16C6P in Genome Data Viewer
Location:
8q12.1
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (56374718..56390710, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (56751944..56767935, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (57287277..57303269, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 7 Neighboring gene short chain dehydrogenase/reductase family 16C member 5 Neighboring gene uncharacterized LOC105375849 Neighboring gene uncharacterized LOC124901948

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103832.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC023464
    Related
    ENST00000517787.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    56374718..56390710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    56751944..56767935 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001145251.1: Suppressed sequence

    Description
    NM_001145251.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.