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TARM1 T cell-interacting, activating receptor on myeloid cells 1 [ Homo sapiens (human) ]

Gene ID: 441864, updated on 2-Nov-2024

Summary

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Official Symbol
TARM1provided by HGNC
Official Full Name
T cell-interacting, activating receptor on myeloid cells 1provided by HGNC
Primary source
HGNC:HGNC:37250
See related
Ensembl:ENSG00000248385 MIM:616802; AllianceGenome:HGNC:37250
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OLT-2
Summary
Enables immunoglobulin receptor binding activity. Involved in negative regulation of CD4-positive, alpha-beta T cell activation. Located in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward bone marrow (RPKM 2.5) See more
Orthologs
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Genomic context

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See TARM1 in Genome Data Viewer
Location:
19q13.42
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (54069895..54081365, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (57148389..57159893, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (54573149..54584634, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 6 Neighboring gene Sharpr-MPRA regulatory region 12456 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:54526043-54526246 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:54539139-54539714 Neighboring gene V-set and transmembrane domain containing 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54605952-54606928 Neighboring gene osteoclast associated Ig-like receptor Neighboring gene NADH:ubiquinone oxidoreductase subunit A3 Neighboring gene TCF3 fusion partner

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Breakpoint characterization of a novel approximately 59 kb genomic deletion on 19q13.42 in autosomal-dominant retinitis pigmentosa with incomplete penetrance. Köhn L, et al. Eur J Hum Genet, 2009 May. PMID 19050727, Free PMC Article
  2. TARM1 Is a Novel Leukocyte Receptor Complex-Encoded ITAM Receptor That Costimulates Proinflammatory Cytokine Secretion by Macrophages and Neutrophils. Radjabova V, et al. J Immunol, 2015 Oct 1. PMID 26311901, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables immunoglobulin receptor binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in adaptive immune response IEA
Inferred from Electronic Annotation
more info
  
involved_in immune response-regulating signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of CD4-positive, alpha-beta T cell activation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
  
located_in specific granule membrane TAS
Traceable Author Statement
more info
  
located_in tertiary granule membrane TAS
Traceable Author Statement
more info
  

General protein information

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Preferred Names
T-cell-interacting, activating receptor on myeloid cells protein 1
Names
OSCAR-like transcript-2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135686.3 → NP_001129158.2  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC012314, AC245052, DQ479398
    Consensus CDS
    CCDS46173.1
    UniProtKB/Swiss-Prot
    B4DWY4, B6A8C7
    Related
    ENSP00000439454.1, ENST00000432826.2
    Conserved Domains (2) summary
    smart00410
    Location:35 → 98
    IG_like; Immunoglobulin like
    cl11960
    Location:124 → 219
    Ig; Immunoglobulin domain

  2. NM_001330650.1 → NP_001317579.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC245052, AK301730
    Consensus CDS
    CCDS82395.1
    UniProtKB/TrEMBL
    A0A087X1Q6
    Related
    ENSP00000484383.1, ENST00000616041.4
    Conserved Domains (2) summary
    smart00410
    Location:43 → 106
    IG_like; Immunoglobulin like
    cl11960
    Location:132 → 227
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    54069895..54081365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003571054.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    44262..55747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054329682.1 → XP_054185657.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform X1

RNA

  1. XR_008485659.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NW_003571055.2 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    44262..55747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054330177.1 → XP_054186152.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform X2

RNA

  1. XR_008485691.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NW_003571056.2 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    44262..55747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054330474.1 → XP_054186449.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform X3

RNA

  1. XR_008485696.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_4

Genomic

  1. NW_003571057.2 Reference GRCh38.p14 ALT_REF_LOCI_4

    Range
    44262..55747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054330727.1 → XP_054186702.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform X4

RNA

  1. XR_008485702.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_5

Genomic

  1. NW_003571058.2 Reference GRCh38.p14 ALT_REF_LOCI_5

    Range
    44262..55747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054330957.1 → XP_054186932.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform X5

RNA

  1. XR_008485708.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_6

Genomic

  1. NW_003571059.2 Reference GRCh38.p14 ALT_REF_LOCI_6

    Range
    44262..55747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054331238.1 → XP_054187213.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform X6

RNA

  1. XR_008485713.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_7

Genomic

  1. NW_003571060.1 Reference GRCh38.p14 ALT_REF_LOCI_7

    Range
    44262..55747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054331513.1 → XP_054187488.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform X7

RNA

  1. XR_008485720.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_8

Genomic

  1. NW_003571061.2 Reference GRCh38.p14 ALT_REF_LOCI_8

    Range
    44262..55747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054333553.1 → XP_054189528.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform X8

RNA

  1. XR_008485851.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_9

Genomic

  1. NT_187693.1 Reference GRCh38.p14 ALT_REF_LOCI_9

    Range
    44262..55747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054333654.1 → XP_054189629.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform X9

RNA

  1. XR_008485856.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    57148389..57159893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054321052.1 → XP_054177027.1  T-cell-interacting, activating receptor on myeloid cells protein 1 isoform X10

RNA

  1. XR_008485154.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B6A8C7.2 GenPept UniProtKB/Swiss-Prot:B6A8C7

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