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RTL8B retrotransposon Gag like 8B [ Homo sapiens (human) ]

Gene ID: 441518, updated on 10-Dec-2019

Summary

Official Symbol
RTL8Bprovided by HGNC
Official Full Name
retrotransposon Gag like 8Bprovided by HGNC
Primary source
HGNC:HGNC:33156
See related
Ensembl:ENSG00000212747
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXX1c; MAR8B; SIRH4; FAM127C
Orthologs

Genomic context

See RTL8B in Genome Data Viewer
Location:
Xq26.3
Exon count:
1
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (135020513..135022542, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134154534..134156924, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chrX.2259 Neighboring gene small integral membrane protein 10 Neighboring gene uncharacterized LOC112268301 Neighboring gene retrotransposon Gag like 8C

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ25577

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
retrotransposon Gag-like protein 8B
Names
Sushi-Ichi retrotransposon homolog 1
family with sequence similarity 127 member C
mammalian retrotransposon derived protein 8B
mammalian retrotransposon-derived 2
protein FAM127C

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078173.2NP_001071641.1  retrotransposon Gag-like protein 8B

    See identical proteins and their annotated locations for NP_001071641.1

    Status: VALIDATED

    Source sequence(s)
    AL136169, BC048268, BC113720, DB490903
    Consensus CDS
    CCDS43996.1
    UniProtKB/Swiss-Prot
    Q17RB0
    Related
    ENSP00000375268.1, ENST00000391440.3
    Conserved Domains (1) summary
    pfam16297
    Location:2113
    DUF4939; Domain of unknown function (DUF4939)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    135020513..135022542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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