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LINC01239 long intergenic non-protein coding RNA 1239 [ Homo sapiens (human) ]

Gene ID: 441389, updated on 10-Dec-2019

Summary

Official Symbol
LINC01239provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1239provided by HGNC
Primary source
HGNC:HGNC:49796
See related
Ensembl:ENSG00000234840
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more

Genomic context

See LINC01239 in Genome Data Viewer
Location:
9p21.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (22646200..22824213)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (22646199..22824212)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene CDKN2B antisense RNA 1 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 6 Neighboring gene DMRT like family A1 Neighboring gene uncharacterized LOC107987054 Neighboring gene chloride intracellular channel 4 pseudogene 1 Neighboring gene uncharacterized LOC105375990 Neighboring gene uncharacterized LOC107987055 Neighboring gene VISTA enhancer hs643

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.
NHGRI GWA Catalog
Genomewide association study of movement-related adverse antipsychotic effects.
NHGRI GWA Catalog
Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
NHGRI GWA Catalog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038977.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC017067, AL645734
    Related
    ENST00000436786.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    22646200..22824213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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