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GTF2IP20 general transcription factor IIi pseudogene 20 [ Homo sapiens (human) ]

Gene ID: 441124, updated on 10-Oct-2023

Summary

Official Symbol
GTF2IP20provided by HGNC
Official Full Name
general transcription factor IIi pseudogene 20provided by HGNC
Primary source
HGNC:HGNC:51732
See related
AllianceGenome:HGNC:51732
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 18.2), bone marrow (RPKM 9.2) and 25 other tissues See more
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Genomic context

See GTF2IP20 in Genome Data Viewer
Location:
1q42.11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (223951266..223992644, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (223141055..223182396, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (224138968..224180346, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene septin 14 pseudogene 15 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:224136303-224136802 Neighboring gene capicua transcriptional repressor pseudogene 5 Neighboring gene RNA, U6 small nuclear 1319, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224180107-224180730 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224180731-224181352 Neighboring gene septin 7 pseudogene 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:224199262-224199956 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:224199957-224200650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2594 Neighboring gene uncharacterized LOC105373061

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132119.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC138393, AW993327, BE086635, BJ989959, BQ932773, CB122954, DA223298, DA863884, DB081302, DB156368, HY310080

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    223951266..223992644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    223141055..223182396 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)