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TMEM89 transmembrane protein 89 [ Homo sapiens (human) ]

Gene ID: 440955, updated on 1-Jun-2020

Summary

Official Symbol
TMEM89provided by HGNC
Official Full Name
transmembrane protein 89provided by HGNC
Primary source
HGNC:HGNC:32372
See related
Ensembl:ENSG00000183396
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 5.1) See more
Orthologs

Genomic context

See TMEM89 in Genome Data Viewer
Location:
3p21.31
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (48620759..48621769, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (48658275..48659189, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene collagen type VII alpha 1 chain Neighboring gene microRNA 711 Neighboring gene ubiquinol-cytochrome c reductase core protein 1 Neighboring gene small nucleolar RNA, H/ACA box 94 Neighboring gene solute carrier family 26 member 6 Neighboring gene microRNA 6824 Neighboring gene cadherin EGF LAG seven-pass G-type receptor 3 Neighboring gene microRNA 4793

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
nucleus HDA PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008269.3NP_001008270.1  transmembrane protein 89 precursor

    See identical proteins and their annotated locations for NP_001008270.1

    Status: VALIDATED

    Source sequence(s)
    BC133036
    Consensus CDS
    CCDS33751.1
    UniProtKB/Swiss-Prot
    A2RUT3
    Related
    ENSP00000329557.3, ENST00000330862.4
    Conserved Domains (1) summary
    pfam15098
    Location:23156
    TMEM89; TMEM89 protein family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    48620759..48621769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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