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LINC01123 long intergenic non-protein coding RNA 1123 [ Homo sapiens (human) ]

Gene ID: 440894, updated on 2-Mar-2021

Summary

Official Symbol
LINC01123provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1123provided by HGNC
Primary source
HGNC:HGNC:49269
See related
Ensembl:ENSG00000204588
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 18.1), duodenum (RPKM 15.3) and 22 other tissues See more
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Genomic context

See LINC01123 in Genome Data Viewer
Location:
2q13
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210226 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (109986980..109995281)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (110744557..110752858)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene LIMS3-LOC440895 readthrough Neighboring gene two pore channel 3 pseudogene Neighboring gene glycosylphosphatidylinositol anchor attachment 1 pseudogene 1 Neighboring gene zinc finger and BTB domain containing 45 pseudogene 1 Neighboring gene zinc finger protein 532 pseudogene Neighboring gene uncharacterized LOC112268438 Neighboring gene delta-like protein 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046110.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC013268, AK056084, BC101448, BP247062
    Related
    ENST00000419296.1
  2. NR_046111.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate 3' exon, compared to variant 1.
    Source sequence(s)
    AC013268, AK056084, BC101448, BP247062
  3. NR_046112.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two alternate internal exons, compared to variant 1.
    Source sequence(s)
    AC013268, AK056084, BP247062, DA999847

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210226

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    109986980..109995281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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