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LINC01720 long intergenic non-protein coding RNA 1720 [ Homo sapiens (human) ]

Gene ID: 440704, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01720provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1720provided by HGNC
Primary source
HGNC:HGNC:52507
See related
Ensembl:ENSG00000231175 AllianceGenome:HGNC:52507
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LINC01720 in Genome Data Viewer
Location:
1q31.1-q31.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (190624890..190801658)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (189971170..190147872)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (190594020..190770788)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene BMP/retinoic acid inducible neural specific 3 Neighboring gene uncharacterized LOC105371658 Neighboring gene MPRA-validated peak568 silencer Neighboring gene MPRA-validated peak569 silencer Neighboring gene MPRA-validated peak571 silencer Neighboring gene BRINP3 divergent transcript Neighboring gene MPRA-validated peak575 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:190647894-190649093 Neighboring gene MPRA-validated peak580 silencer Neighboring gene MPRA-validated peak582 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr1:190827140-190827685 Neighboring gene MPRA-validated peak586 silencer Neighboring gene MPRA-validated peak587 silencer Neighboring gene MPRA-validated peak588 silencer Neighboring gene MPRA-validated peak594 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2255 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2256 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 46 Neighboring gene MPRA-validated peak595 silencer Neighboring gene MPRA-validated peak596 silencer Neighboring gene long intergenic non-protein coding RNA 1680

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033922.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139135, AL158838
    Related
    ENST00000413356.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    190624890..190801658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    189971170..190147872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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