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LINC00857 long intergenic non-protein coding RNA 857 [ Homo sapiens (human) ]

Gene ID: 439990, updated on 22-Jan-2023

Summary

Official Symbol
LINC00857provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 857provided by HGNC
Primary source
HGNC:HGNC:45114
See related
Ensembl:ENSG00000237523 AllianceGenome:HGNC:45114
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HUMT
Expression
Broad expression in duodenum (RPKM 2.6), small intestine (RPKM 2.1) and 16 other tissues See more
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Genomic context

See LINC00857 in Genome Data Viewer
Location:
10q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (80207710..80219657)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (81076822..81088782)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (81967466..81979413)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene placenta associated 9 Neighboring gene annexin A11 Neighboring gene ribosomal protein S12 pseudogene 2 Neighboring gene uncharacterized LOC124902470 Neighboring gene uncharacterized LOC100130698 Neighboring gene eukaryotic translation initiation factor 5A pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • lncRNA highly upregulated in metastatic TNBC-lymph node

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038464.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC048265
    Related
    ENST00000422847.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    80207710..80219657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    81076822..81088782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)