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LOC4352706 probable ureidoglycolate hydrolase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352706, updated on 16-Jul-2024

Summary

Gene symbol
LOC4352706
Gene description
probable ureidoglycolate hydrolase
Locus tag
OSNPB_120597500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
UAH; OsUAH; OsJ_36749
Expression
Ubiquitous expression in roots before flowering (RPKM 32.7), leaves after flowering (RPKM 27.4) and 6 other tissues See more
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Genomic context

Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (25799402..25804028, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25087022..25091537, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4352704 Neighboring gene renalase Neighboring gene flowering locus K homology domain-like Neighboring gene protein WRKY1

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
ureidoglycolate hydrolase
Names
LOC_Os12g40550
Ureidoglycolate hydrolase
NP_001410539.1
XP_066162094.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423610.1NP_001410539.1  ureidoglycolate hydrolase precursor

    Status: VALIDATED

    Source sequence(s)
    CB644200, CB661343, CB669466, CF324522, CI668296
    UniProtKB/Swiss-Prot
    A0A0P0YC33, B9GE33, Q0IM51, Q2QMN7
    UniProtKB/TrEMBL
    A0A0P0YBW4, B8BMU1

RNA

  1. NR_186856.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CB644200, CB661343, CB669466, CI668296

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    25799402..25804028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066305997.1XP_066162094.1  ureidoglycolate hydrolase isoform X1