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LOC4352633 TATA-binding protein 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352633, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4352633
Gene description
TATA-binding protein 2-like
Locus tag
OSNPB_120580300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 9.0), leaves after flowering (RPKM 8.5) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24742089..24746623)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (24031219..24035708)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene protein LEO1 homolog Neighboring gene uncharacterized LOC136354641 Neighboring gene uncharacterized LOC112937310 Neighboring gene probable polyamine transporter At3g19553 Neighboring gene uncharacterized LOC4352635

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA-binding protein 2-like
Names
Os12g0580300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    24742089..24746623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763030.2 → XP_015618516.1  TATA-binding protein 2-like

    UniProtKB/TrEMBL
    B9FA46, Q0IMB8, Q2QN41
    Conserved Domains (1) summary
    PLN00062
    Location:30 → 208
    PLN00062; TATA-box-binding protein; Provisional
Nucleotide Protein
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