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LOC4351945 tryptamine 5-hydroxylase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351945, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4351945
Gene description
tryptamine 5-hydroxylase-like
Locus tag
OSNPB_120268000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SL; T5H; CYP71P1
Expression
Broad expression in leaves after flowering (RPKM 31.4), roots before flowering (RPKM 16.8) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (9579767..9582009, complement)

Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272277 Neighboring gene uncharacterized LOC107279553 Neighboring gene E3 ubiquitin-protein ligase RING1 Neighboring gene prolamin PPROL 17D-like Neighboring gene prolamin PPROL 17D-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Loss function of SL (sekiguchi lesion) in the rice cultivar Minghui 86 leads to enhanced resistance to (hemi)biotrophic pathogens. Tian D, et al. BMC Plant Biol, 2020 Nov 4. PMID 33148178, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Loss function of SL (sekiguchi lesion) in the rice cultivar Minghui 86 leads to enhanced resistance to (hemi)biotrophic pathogens.
    Title: Loss function of SL (sekiguchi lesion) in the rice cultivar Minghui 86 leads to enhanced resistance to (hemi)biotrophic pathogens.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tryptamine 5-hydroxylase
Names
Cytochrome P450 71P1
LOC_Os12g16720
Protein SEKIGUCHI LESION
Tryptamine 5-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423452.1 → NP_001410381.1  tryptamine 5-hydroxylase

    Status: VALIDATED

    Source sequence(s)
    AK071599, AK121788, CI279405
    UniProtKB/Swiss-Prot
    Q0IP04, Q2QUC5

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

    Range
    9579767..9582009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762778.2 → XP_015618264.1  tryptamine 5-hydroxylase

    UniProtKB/TrEMBL
    Q2QUC5
    Conserved Domains (1) summary
    cd11072
    Location:72 → 503
    CYP71-like; cytochrome P450 family 71 and similar cytochrome P450s
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QUC5.1 GenPept UniProtKB/Swiss-Prot:Q2QUC5

Gene LinkOut

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Molecular Biology Databases