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LOC4350881 acyl-coenzyme A oxidase 2, peroxisomal [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350881, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4350881
Gene description
acyl-coenzyme A oxidase 2, peroxisomal
Locus tag
OSNPB_110605500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 31.8), roots before flowering (RPKM 31.6) and 6 other tissues See more
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Genomic context

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See LOC4350881 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25304127..25308249, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23354152..23358321, complement)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein Pikm1-TS-like Neighboring gene uncharacterized LOC4350880 Neighboring gene disease resistance protein PIK6-NP Neighboring gene uncharacterized LOC136353850

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables acyl-CoA oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation using acyl-CoA oxidase IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acyl-coenzyme A oxidase 2, peroxisomal
Names
Os11g0605500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    25304127..25308249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761002.3 → XP_015616488.1  acyl-coenzyme A oxidase 2, peroxisomal

    UniProtKB/TrEMBL
    B9FI80, Q2R1G8
    Conserved Domains (1) summary
    PLN02636
    Location:24 → 699
    PLN02636; acyl-coenzyme A oxidase
Nucleotide Protein
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