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LOC4350355 exosome complex component RRP43 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350355, updated on 11-Apr-2024

Summary

Gene symbol
LOC4350355
Gene description
exosome complex component RRP43
Locus tag
OSNPB_110311300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 14.7), flowers (RPKM 12.8) and 6 other tissues See more
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Genomic context

See LOC4350355 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (11980461..11987976)

Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 Neighboring gene uncharacterized LOC4350354 Neighboring gene dolichol-phosphate mannose synthase subunit 2 Neighboring gene uncharacterized LOC9271704

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
exosome complex component RRP43
Names
Os11g0311300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

    Range
    11980461..11987976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759909.2XP_015615395.1  exosome complex component RRP43

    UniProtKB/TrEMBL
    A0A0P0Y1Q0, A0A8J8XTE4, B7ELW5, B8BK82, B9GAH1, Q0IT44
    Conserved Domains (1) summary
    cd11369
    Location:23293
    RNase_PH_RRP43; RRP43 subunit of eukaryotic exosome