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LOC4348610 carbon catabolite repressor protein 4 homolog 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348610, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4348610
Gene description
carbon catabolite repressor protein 4 homolog 1
Locus tag
OSNPB_100412100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 46.1), leaves after flowering (RPKM 44.7) and 6 other tissues See more
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Genomic context

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See LOC4348610 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (15016394..15021711, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (14357053..14362439, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353705 Neighboring gene phospholipid-transporting ATPase 3 Neighboring gene uncharacterized LOC136353544 Neighboring gene uncharacterized LOC136353706

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbon catabolite repressor protein 4 homolog 1
Names
Os10g0412100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    15016394..15021711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759184.3 → XP_015614670.1  carbon catabolite repressor protein 4 homolog 1

    UniProtKB/TrEMBL
    A2Z770, Q0IXR4, Q338D5
    Conserved Domains (1) summary
    PLN03144
    Location:1 → 605
    PLN03144; Carbon catabolite repressor protein 4 homolog; Provisional

  2. XM_066304752.1 → XP_066160849.1  carbon catabolite repressor protein 4 homolog 1

    UniProtKB/TrEMBL
    A2Z770, Q0IXR4, Q338D5
Nucleotide Protein
Heading Accession and Version

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