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LOC4347877 arogenate dehydratase/prephenate dehydratase 6, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347877, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4347877
Gene description
arogenate dehydratase/prephenate dehydratase 6, chloroplastic
Locus tag
OSNPB_090566050
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1155_H10.7
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Genomic context

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Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22563885..22565638)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene arogenate dehydratase/prephenate dehydratase 6, chloroplastic Neighboring gene uncharacterized LOC4347876 Neighboring gene polyadenylation and cleavage factor homolog 4 Neighboring gene uncharacterized LOC107278876

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arogenate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables prephenate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-phenylalanine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arogenate dehydratase/prephenate dehydratase 6, chloroplastic
Names
OSJNBa0070E11.16
Os09g0566050
putative prephenate dehydratase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    22563885..22565638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756120.2 → XP_015611606.1  arogenate dehydratase/prephenate dehydratase 6, chloroplastic

    UniProtKB/TrEMBL
    A2Z456, Q650V6, Q652N0
    Conserved Domains (1) summary
    PLN02317
    Location:6 → 392
    PLN02317; arogenate dehydratase
Nucleotide Protein
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