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LOC4347735 probable 26S proteasome non-ATPase regulatory subunit 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347735, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4347735
Gene description
probable 26S proteasome non-ATPase regulatory subunit 3
Locus tag
OSNPB_090541900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
21D7; Os21D7
Expression
Ubiquitous expression in flower buds (RPKM 28.0), flowers (RPKM 24.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (25780880..25784284, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21338826..21342212, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347733 Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene uncharacterized LOC4347736 Neighboring gene aspartyl protease family protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, lid subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable 26S proteasome non-ATPase regulatory subunit 3
Names
B1274F11.40
Os09g0541900
P0478E02.12
putative 26S proteasome non-ATPase regulatory subunit 3
putative nuclear antigen 21D7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    25780880..25784284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757205.2 → XP_015612691.1  probable 26S proteasome non-ATPase regulatory subunit 3

    UniProtKB/TrEMBL
    A0A5S6R840, B9FYG5, Q0IZY4, Q7XJ14, Q8W426
    Conserved Domains (2) summary
    pfam01399
    Location:311 → 417
    PCI; PCI domain
    pfam08375
    Location:420 → 477
    Rpn3_C; Proteasome regulatory subunit C-terminal
Nucleotide Protein
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