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LOC4347099 probable monogalactosyldiacylglycerol synthase 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347099, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4347099
Gene description
probable monogalactosyldiacylglycerol synthase 1, chloroplastic
Locus tag
OSNPB_090423600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
MGD1; OsMGD1; OsJ_29413; OsJ_028264
Expression
Ubiquitous expression in flower buds (RPKM 16.6), leaves before flowering (RPKM 16.0) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (19727274..19733840, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (15349030..15355642, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351826 Neighboring gene probable folate-biopterin transporter 6 Neighboring gene aspartyl protease family protein At5g10770 Neighboring gene uncharacterized LOC4347100 Neighboring gene AP2-like ethylene-responsive transcription factor At1g16060

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable monogalactosyldiacylglycerol synthase 1, chloroplastic
Names
LOC_Os09g25580
P0418B08.19
putative MGDG synthase type A
NP_001404207.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417278.1 → NP_001404207.1  probable monogalactosyldiacylglycerol synthase 1, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AK243359, AU057037, CB650787
    UniProtKB/Swiss-Prot
    A0A0P0XNP2, B7FAB1, Q0J1N8, Q69QJ7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    19727274..19733840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q69QJ7.1 GenPept UniProtKB/Swiss-Prot:Q69QJ7

Gene LinkOut

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Molecular Biology Databases
Research Materials