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LOC4344260 UDP-glucuronic acid decarboxylase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344260, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344260
Gene description
UDP-glucuronic acid decarboxylase 2
Locus tag
OSNPB_070674100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
UXS-6
Expression
Broad expression in flowers (RPKM 20.8), flower buds (RPKM 16.9) and 5 other tissues See more
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Genomic context

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See LOC4344260 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28728381..28731707)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28494701..28498072)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase T3-like Neighboring gene glutathione S-transferase T3-like Neighboring gene large ribosomal subunit protein eL22z Neighboring gene pentatricopeptide repeat-containing protein At3g18020

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Characterization of soluble and putative membrane-bound UDP-glucuronic acid decarboxylase (OsUXS) isoforms in rice. Suzuki K, et al. Arch Biochem Biophys, 2004 Nov 15. PMID 15488465
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables UDP-glucuronate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronic acid decarboxylase 2
Names
Os07g0674100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    28728381..28731707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792109.3 → XP_015647595.1  UDP-glucuronic acid decarboxylase 2

    UniProtKB/TrEMBL
    Q0D3P7, Q6F3E9
    Conserved Domains (1) summary
    PLN02206
    Location:5 → 442
    PLN02206; UDP-glucuronate decarboxylase
Nucleotide Protein
Heading Accession and Version

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