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LOC4341765 uncharacterized LOC4341765 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341765, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4341765
Gene description
uncharacterized LOC4341765
Locus tag
OSNPB_060663600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 4.6), roots after flowering (RPKM 4.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28262829..28265770, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27396040..27400433, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase STY13 Neighboring gene squamosa promoter-binding-like protein 11 Neighboring gene uncharacterized LOC112939244 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic Neighboring gene receptor-like cytosolic serine/threonine-protein kinase RBK1 Neighboring gene uncharacterized LOC112939332

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity, producing 5'-phosphomonoesters IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4341765
Names
OSJNBb0065C04.45
Os06g0663600
endonuclease V protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    28262829..28265770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785752.3 → XP_015641238.1  uncharacterized protein LOC4341765 isoform X2

    UniProtKB/TrEMBL
    B8B114
    Conserved Domains (1) summary
    cd06559
    Location:4 → 245
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

  2. XM_066311367.1 → XP_066167464.1  uncharacterized protein LOC4341765 isoform X1

    UniProtKB/TrEMBL
    B8B114, B9FQD2

  3. XM_066311369.1 → XP_066167466.1  uncharacterized protein LOC4341765 isoform X3

    UniProtKB/TrEMBL
    B8B114

  4. XM_015785749.3 → XP_015641235.1  uncharacterized protein LOC4341765 isoform X1

    UniProtKB/TrEMBL
    B8B114, B9FQD2
    Conserved Domains (1) summary
    cd06559
    Location:20 → 261
    Endonuclease_V; a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

  5. XM_015785750.3 → XP_015641236.1  uncharacterized protein LOC4341765 isoform X1

    UniProtKB/TrEMBL
    B8B114, B9FQD2
    Conserved Domains (1) summary
    cd06559
    Location:20 → 261
    Endonuclease_V; a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

  6. XM_066311368.1 → XP_066167465.1  uncharacterized protein LOC4341765 isoform X2

    UniProtKB/TrEMBL
    B8B114
Nucleotide Protein
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