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LOC4341340 ent-kaurene oxidase-like 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341340, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4341340
Gene description
ent-kaurene oxidase-like 5
Locus tag
OSNPB_060568600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsKO5; OsKOL5; OsKOS2; CYP701A9
Expression
Restricted expression toward roots before flowering (RPKM 15.3) See more
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Genomic context

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See LOC4341340 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22841444..22851323, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21982654..21992528, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily member 7 Neighboring gene V-type proton ATPase subunit B 1 Neighboring gene small nucleolar RNA Z247 Neighboring gene ent-sandaracopimaradiene 3-hydroxylase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The rice dwarf virus P2 protein interacts with ent-kaurene oxidases in vivo, leading to reduced biosynthesis of gibberellins and rice dwarf symptoms. Zhu S, et al. Plant Physiol, 2005 Dec. PMID 16299167, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ent-kaurene oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ent-kaurene oxidation to kaurenoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gibberellin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ent-kaurene oxidase-like 5
Names
Cytochrome P450 701A9
Ent-kaurene oxidase 5
LOC_Os06g37224
OSJNBa0062E01.13
NP_001408556.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421627.1 → NP_001408556.1  ent-kaurene oxidase-like 5

    Status: VALIDATED

    Source sequence(s)
    AK071743, AP014962, AY660664, CI600015
    UniProtKB/Swiss-Prot
    A0A0P0WXZ0, Q5Z5S6, Q68YV9
    UniProtKB/TrEMBL
    B8B3T5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    22841444..22851323 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5Z5S6.1 GenPept UniProtKB/Swiss-Prot:Q5Z5S6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials