U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4338898 uncharacterized LOC4338898 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338898, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4338898
Gene description
uncharacterized LOC4338898
Locus tag
OSNPB_050435700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 12.3), flower buds (RPKM 10.7) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21429619..21431932)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21322791..21325365)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338896 Neighboring gene protein VASCULATURE COMPLEXITY AND CONNECTIVITY Neighboring gene uncharacterized LOC4338897 Neighboring gene subtilisin-like protease SBT3 Neighboring gene probable serine/threonine-protein kinase At1g01540

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydro-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC4338898
Names
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
Os05g0435700

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    21429619..21431932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785219.2 → XP_015640705.1  uncharacterized protein LOC4338898

    UniProtKB/TrEMBL
    A0A0P0WMU9, Q0DHW4, Q6I5L0
    Conserved Domains (1) summary
    PRK00006
    Location:66 → 212
    fabZ; 3-hydroxyacyl-ACP dehydratase FabZ
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials