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LOC4337506 30S ribosomal protein S17, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337506, updated on 21-Dec-2023

Summary

Gene symbol
LOC4337506
Gene description
30S ribosomal protein S17, chloroplastic-like
Locus tag
OSNPB_040691600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CS17; rps17; OsJ_16738
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Genomic context

Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (35381480..35382265)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 5.10 Neighboring gene transportin-1-like Neighboring gene increased DNA methylation 1 Neighboring gene FT-interacting protein 1

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
small ribosomal subunit protein uS17c; 30S ribosomal protein S17, chloroplastic
Names
LOC_Os04g59494
OSJNBb0020J19.5
Os04g0691600

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402462.1NP_001389391.1  small ribosomal subunit protein uS17c

    Status: VALIDATED

    Source sequence(s)
    AF095707, CI297278
    UniProtKB/Swiss-Prot
    A0A0P0WGT3, Q0J8R3, Q7XKA4, Q9ZST1
    UniProtKB/TrEMBL
    B8AS60

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    35381480..35382265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015780704.2XP_015636190.1  30S ribosomal protein S17, chloroplastic

    Conserved Domains (1) summary
    pfam00366
    Location:83146
    Ribosomal_S17; Ribosomal protein S17