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LOC4337312 beta-fructofuranosidase, insoluble isoenzyme 6-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337312, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4337312
Gene description
beta-fructofuranosidase, insoluble isoenzyme 6-like
Locus tag
OSNPB_040664800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CIN6; OsCIN6
Expression
Restricted expression toward roots before flowering (RPKM 10.5) See more
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Genomic context

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See LOC4337312 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34460714..34463212, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33940929..33943794, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene agmatine coumaroyltransferase-2 Neighboring gene agmatine hydroxycinnamoyltransferase 1-like Neighboring gene beta-fructofuranosidase, insoluble isoenzyme 5-like Neighboring gene uncharacterized LOC4337314

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Molecular cloning and expression analysis of the cell-wall invertase gene family in rice (Oryza sativa L.). Cho JI, et al. Plant Cell Rep, 2005 Jun. PMID 15759120

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-fructofuranosidase, insoluble isoenzyme 6
Names
Cell wall beta-fructosidase 6
Invertase 6
LOC_Os04g56920
OSJNBa0087O24.3
Sucrose hydrolase 6
cell-wall invertase 6
putative glycosyl hydrolase
NP_001406844.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419915.1 → NP_001406844.1  beta-fructofuranosidase, insoluble isoenzyme 6 precursor

    Status: VALIDATED

    Source sequence(s)
    AY578163
    UniProtKB/Swiss-Prot
    Q0J9A1, Q56UD0, Q7XPK6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    34460714..34463212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q56UD0.1 GenPept UniProtKB/Swiss-Prot:Q56UD0

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials