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LOC4336619 U4/U6 small nuclear ribonucleoprotein Prp31 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336619, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4336619
Gene description
U4/U6 small nuclear ribonucleoprotein Prp31 homolog
Locus tag
OSNPB_040555400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 31.3), flowers (RPKM 26.1) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28297036..28300848)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27791756..27795800)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene scarecrow-like protein 27 Neighboring gene putative glycerol-3-phosphate transporter 1 Neighboring gene BEACH domain-containing protein C2 Neighboring gene actin-depolymerizing factor 6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6 small nuclear ribonucleoprotein Prp31 homolog
Names
Os04g0555400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    28297036..28300848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310117.1 → XP_066166214.1  U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1

    UniProtKB/TrEMBL
    B8ASV6

  2. XM_015779959.3 → XP_015635445.1  U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X2

    UniProtKB/TrEMBL
    A0A0P0WD87, B8ASV6, Q7XU07
    Conserved Domains (2) summary
    pfam01798
    Location:116 → 331
    Nop; snoRNA binding domain, fibrillarin
    pfam09785
    Location:346 → 456
    Prp31_C; Prp31 C terminal domain
Nucleotide Protein
Heading Accession and Version

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