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LOC4336245 phosphoglycolate phosphatase 1A, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336245, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336245
Gene description
phosphoglycolate phosphatase 1A, chloroplastic
Locus tag
OSNPB_040490800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in leaves before flowering (RPKM 197.5), roots after flowering (RPKM 140.5) and 3 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25024817..25027421, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24527972..24530518, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene PTI1-like tyrosine-protein kinase 3 Neighboring gene CMP-sialic acid transporter 4-like Neighboring gene uncharacterized LOC4336244 Neighboring gene amino acid permease 3 Neighboring gene disease resistance protein RGA2 Neighboring gene uncharacterized LOC4336247

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoglycolate phosphatase 1A, chloroplastic
Names
Os04g0490800
phosphoglycolate phosphatase 1B, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    25024817..25027421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781302.3 → XP_015636788.1  phosphoglycolate phosphatase 1A, chloroplastic

    UniProtKB/TrEMBL
    B8AVV2, Q01IU7, Q0JC56, Q7F985, Q7X7H3
    Conserved Domains (1) summary
    PLN02645
    Location:71 → 365
    PLN02645; phosphoglycolate phosphatase
Nucleotide Protein
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