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Defb45 defensin beta 45 [ Mus musculus (house mouse) ]

Gene ID: 433490, updated on 17-Aug-2024

Summary

Official Symbol
Defb45provided by MGI
Official Full Name
defensin beta 45provided by MGI
Primary source
MGI:MGI:3650541
See related
Ensembl:ENSMUSG00000062124 AllianceGenome:MGI:3650541
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Defb27
Expression
Restricted expression toward genital fat pad adult (RPKM 33.5) See more
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Genomic context

See Defb45 in Genome Data Viewer
Location:
2 H1; 2 75.41 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (152435111..152438405, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (152593191..152596485, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene defensin beta 21 Neighboring gene defensin beta 19 Neighboring gene defensin beta 36 Neighboring gene protein kish-A pseudogene Neighboring gene predicted gene, 31618

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037752.2NP_001032841.1  beta-defensin 27 precursor

    See identical proteins and their annotated locations for NP_001032841.1

    Status: VALIDATED

    Source sequence(s)
    AK005919
    Consensus CDS
    CCDS38278.1
    UniProtKB/TrEMBL
    Q3V490
    Related
    ENSMUSP00000105460.3, ENSMUST00000109834.3
    Conserved Domains (1) summary
    pfam13841
    Location:2352
    Defensin_beta_2; Beta defensin

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    152435111..152438405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)