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LOC4334011 endoplasmic reticulum oxidoreductin-1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334011, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334011
Gene description
endoplasmic reticulum oxidoreductin-1
Locus tag
OSNPB_030733800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 36.5), roots after flowering (RPKM 35.8) and 6 other tissues See more
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Genomic context

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See LOC4334011 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30944685..30948554, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30062334..30066210, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene GRF1-interacting factor 1 Neighboring gene uncharacterized LOC4334012 Neighboring gene uncharacterized LOC4334013

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. ER membrane-localized oxidoreductase Ero1 is required for disulfide bond formation in the rice endosperm. Onda Y, et al. Proc Natl Acad Sci U S A, 2009 Aug 18. PMID 19666483, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. formation of native disulfide bonds in proglutelins depends on an electron transfer pathway involving OsEro1 and OsPDIL
    Title: ER membrane-localized oxidoreductase Ero1 is required for disulfide bond formation in the rice endosperm.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-disulfide reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiol oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoplasmic reticulum oxidoreductin-1
Names
Os03g0733800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    30944685..30948554 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772704.3 → XP_015628190.1  endoplasmic reticulum oxidoreductin-1

    UniProtKB/TrEMBL
    A0A0P0W2N0, B8AR26, Q6AVU2
    Conserved Domains (1) summary
    pfam04137
    Location:101 → 446
    ERO1; Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Nucleotide Protein
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