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LOC4333598 general negative regulator of transcription subunit 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333598, updated on 21-Dec-2023

Summary

Gene symbol
LOC4333598
Gene description
general negative regulator of transcription subunit 3
Locus tag
OSNPB_030652100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 22.9), leaves before flowering (RPKM 20.8) and 6 other tissues See more
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Genomic context

Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (25334283..25345012)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938331 Neighboring gene protein QUIRKY Neighboring gene protein argonaute MEL1-like Neighboring gene uncharacterized LOC9270359

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
general negative regulator of transcription subunit 3
Names
Os03g0652100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    25334283..25345012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776828.2XP_015632314.1  general negative regulator of transcription subunit 3 isoform X2

    UniProtKB/TrEMBL
    A0A0P0W0W0, B8ANJ0, Q10FX7, Q7XZZ2
    Conserved Domains (3) summary
    COG5665
    Location:12849
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3226
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam17823
    Location:245477
    DUF5585; Family of unknown function (DUF5585)
  2. XM_015776827.2XP_015632313.1  general negative regulator of transcription subunit 3 isoform X1

    UniProtKB/TrEMBL
    Q10FX7
    Conserved Domains (4) summary
    COG5665
    Location:12856
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3233
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:714852
    NOT2_3_5; NOT2 / NOT3 / NOT5 family
    pfam08690
    Location:260310
    GET2; GET complex subunit GET2