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LOC4333117 probable 6-phosphogluconolactonase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333117, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4333117
Gene description
probable 6-phosphogluconolactonase 1
Locus tag
OSNPB_030416500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_010814
Expression
Broad expression in flower buds (RPKM 7.4), mature seeds (RPKM 5.5) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (17743696..17748632, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17288043..17293117, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene COBRA-like protein 5 Neighboring gene COBRA-like protein 2 Neighboring gene uncharacterized LOC107280421 Neighboring gene low molecular mass early light-inducible protein HV90, chloroplastic-like Neighboring gene cytochrome P450 78A5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 6-phosphogluconolactonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable 6-phosphogluconolactonase 1
Names
6PGL 1
LOC_Os03g30300
OSJNBb0059G13.23
NP_001404611.1
XP_025880030.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417682.1 → NP_001404611.1  probable 6-phosphogluconolactonase 1

    Status: VALIDATED

    Source sequence(s)
    AK103024, CI214238, CI525841, CI594334, CI743284
    UniProtKB/Swiss-Prot
    A3AJ42, B7ETZ6, Q75IV7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    17743696..17748632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026024245.2 → XP_025880030.1  probable 6-phosphogluconolactonase 1 isoform X1

    Conserved Domains (1) summary
    PLN02360
    Location:27 → 294
    PLN02360; probable 6-phosphogluconolactonase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q75IV7.1 GenPept UniProtKB/Swiss-Prot:Q75IV7

Gene LinkOut

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Research Materials