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LOC4333089 putative ubiquitin-like-specific protease 1B [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333089, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4333089
Gene description
putative ubiquitin-like-specific protease 1B
Locus tag
OSNPB_030410100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 1.9), flower buds (RPKM 1.8) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (17335641..17341239)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (16888629..16894263)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB1 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene protein ELF4-LIKE 3 Neighboring gene uncharacterized protein At2g37660, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deSUMOylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein desumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative ubiquitin-like-specific protease 1B
Names
Os03g0410100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    17335641..17341239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773256.3 → XP_015628742.1  putative ubiquitin-like-specific protease 1B isoform X1

    UniProtKB/TrEMBL
    A2XHW0, Q10JS3, Q75K43
    Conserved Domains (1) summary
    cl23802
    Location:121 → 397
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  2. XM_015773254.3 → XP_015628740.1  putative ubiquitin-like-specific protease 1B isoform X1

    UniProtKB/TrEMBL
    A2XHW0, Q10JS3, Q75K43
    Conserved Domains (1) summary
    cl23802
    Location:121 → 397
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  3. XM_015773257.3 → XP_015628743.1  putative ubiquitin-like-specific protease 1B isoform X2

    Conserved Domains (1) summary
    cl23802
    Location:121 → 382
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain
Nucleotide Protein
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