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LOC4332055 26S proteasome non-ATPase regulatory subunit 13 homolog B [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332055, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4332055
Gene description
26S proteasome non-ATPase regulatory subunit 13 homolog B
Locus tag
OSNPB_030214600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsRPN9b
Expression
Ubiquitous expression in flower buds (RPKM 51.6), leaves after flowering (RPKM 49.2) and 6 other tissues See more
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Genomic context

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See LOC4332055 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6047337..6051227)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (5999877..6003771)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ninja-family protein MODD-like Neighboring gene digalactosyldiacylglycerol synthase 2, chloroplastic Neighboring gene uncharacterized LOC4332056 Neighboring gene GDP-mannose transporter GONST3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, lid subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 13 homolog B
Names
26S proteasome regulatory particle non-ATPase subunit9b
Os03g0214600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    6047337..6051227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775033.3 → XP_015630519.1  26S proteasome non-ATPase regulatory subunit 13 homolog B

    UniProtKB/TrEMBL
    A0A8J8XKV7, B8AQT0, B9F666, Q0DU02, Q10Q05
    Conserved Domains (1) summary
    pfam01399
    Location:235 → 343
    PCI; PCI domain
Nucleotide Protein
Heading Accession and Version

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