LOC4331842 eukaryotic translation initiation factor 3 subunit K-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4331842
Gene description: eukaryotic translation initiation factor 3 subunit K-like
Locus tag: OSNPB_030182700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: eIF3k; TIF3K1; OsJ_09669
Expression: Ubiquitous expression in flower buds (RPKM 88.4), leaves after flowering (RPKM 79.3) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (4339449..4342731, complement)

Chromosome 3 - NC_029258.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ribosome binding	IEA Inferred from Electronic Annotation more info	PubMed
enables translation initiation factor activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of translational initiation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
part_of eukaryotic translation initiation factor 3 complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: eukaryotic translation initiation factor 3 subunit K

Names: LOC_Os03g08450; OSJNBa0032G08.17; eIF-3 p25

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001417250.1 → NP_001404179.1 eukaryotic translation initiation factor 3 subunit K

Status: VALIDATED

Source sequence(s)

CA999965, CI029578, CI296239, CI359665

UniProtKB/Swiss-Prot

Q0DUJ9, Q10QU7, Q94HF1

UniProtKB/TrEMBL

A2XD90

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029258.1 Reference IRGSP-1.0 Primary Assembly

Range

4339449..4342731 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015776790.2 → XP_015632276.1 eukaryotic translation initiation factor 3 subunit K

UniProtKB/Swiss-Prot

Q94HF1

Conserved Domains (1) summary

cl24019
Location:60 → 190

CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family