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LOC4331834 protein TIFY 11b-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331834, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4331834
Gene description
protein TIFY 11b-like
Locus tag
OSNPB_030181100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
JAZ10; OsJAZ4; OsJAZ10; TIFY11B; OsTIFY11b
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4259392..4260493)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4248884..4249898)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein TIFY 11a-like Neighboring gene protein TIFY 11c-like Neighboring gene protein WHAT'S THIS FACTOR 1, chloroplastic Neighboring gene 3-ketoacyl-CoA synthase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of jasmonic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to wounding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein TIFY 11b
Names
Jasmonate ZIM domain-containing protein 10
LOC_Os03g08330
OSJNBa0050H14.24
OSJNBb0076N15.10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417248.1 → NP_001404177.1  protein TIFY 11b

    Status: VALIDATED

    Source sequence(s)
    AK120087, AU162678, CI164284, CI559460, CI638030
    UniProtKB/Swiss-Prot
    A0A0P0VTU9, Q10QW3, Q8GSA8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    4259392..4260493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10QW3.1 GenPept UniProtKB/Swiss-Prot:Q10QW3

Gene LinkOut

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