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Sfta2 surfactant associated 2 [ Mus musculus (house mouse) ]

Gene ID: 433102, updated on 5-Mar-2024

Summary

Official Symbol
Sfta2provided by MGI
Official Full Name
surfactant associated 2provided by MGI
Primary source
MGI:MGI:3643293
See related
Ensembl:ENSMUSG00000090509 AllianceGenome:MGI:3643293
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG433102
Summary
Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and extracellular region. Orthologous to human SFTA2 (surfactant associated 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward lung adult (RPKM 108.0) See more
Orthologs
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Genomic context

See Sfta2 in Genome Data Viewer
Location:
17 B1; 17 18.7 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (35960600..35961461)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (35649708..35650569)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene mucin 21 Neighboring gene mucin like 3 Neighboring gene valyl-tRNA synthetase 2, mitochondrial Neighboring gene STARR-positive B cell enhancer ABC_E7529 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:35808865-35809171 Neighboring gene general transcription factor II H, polypeptide 4 Neighboring gene STARR-positive B cell enhancer ABC_E7530

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
surfactant-associated protein 2
Names
surfactant-associated protein G

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163194.1NP_001156666.1  surfactant-associated protein 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AK087178
    Consensus CDS
    CCDS50093.1
    UniProtKB/Swiss-Prot
    E9PXB6
    Related
    ENSMUSP00000132839.3, ENSMUST00000171166.3
    Conserved Domains (1) summary
    pfam15210
    Location:1977
    SFTA2; Surfactant-associated protein 2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    35960600..35961461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)