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Ly6g6f lymphocyte antigen 6 family member G6F [ Mus musculus (house mouse) ]

Gene ID: 433099, updated on 5-Mar-2024

Summary

Official Symbol
Ly6g6fprovided by MGI
Official Full Name
lymphocyte antigen 6 family member G6Fprovided by MGI
Primary source
MGI:MGI:3616082
See related
Ensembl:ENSMUSG00000034923 AllianceGenome:MGI:3616082
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human LY6G6F (lymphocyte antigen 6 family member G6F). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in spleen adult (RPKM 2.9), liver E14.5 (RPKM 2.3) and 14 other tissues See more
Orthologs
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Genomic context

Location:
17 B1; 17 18.59 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (35299514..35304571, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (35080538..35085595, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 family member G6C Neighboring gene lymphocyte antigen 6 family member G6D Neighboring gene STARR-seq mESC enhancer starr_42446 Neighboring gene lymphocyte antigen 6 family member G6E Neighboring gene STARR-positive B cell enhancer ABC_E7527 Neighboring gene abhydrolase domain containing 16A Neighboring gene lymphocyte antigen 6 family member G5C

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Endonuclease-mediated (2) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
lymphocyte antigen 6 complex locus protein G6f
Names
lymphocyte antigen 6 complex, locus G6F

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163192.1NP_001156664.1  lymphocyte antigen 6 complex locus protein G6f precursor

    See identical proteins and their annotated locations for NP_001156664.1

    Status: PROVISIONAL

    Source sequence(s)
    BC157908
    Consensus CDS
    CCDS50083.1
    UniProtKB/TrEMBL
    A0A1L6ZA38, B2RXM6, B7ZWI6, E9Q7V4
    Related
    ENSMUSP00000046380.7, ENSMUST00000038507.7
    Conserved Domains (2) summary
    smart00410
    Location:22117
    IG_like; Immunoglobulin like
    cl11960
    Location:26127
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    35299514..35304571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)