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LOC4330767 histidine--tRNA ligase, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330767, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330767
Gene description
histidine--tRNA ligase, chloroplastic/mitochondrial
Locus tag
OSNPB_020754700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 20.2), roots after flowering (RPKM 14.6) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32244700..32249765, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31749368..31754468, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB41 Neighboring gene outer envelope protein 64, mitochondrial Neighboring gene uncharacterized LOC136355158 Neighboring gene uncharacterized LOC4330768 Neighboring gene 5'-adenylylsulfate reductase-like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histidine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in histidyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histidine--tRNA ligase, chloroplastic/mitochondrial
Names
Os02g0754700
P0627E03.18
putative histidine-tRNA ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    32244700..32249765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770386.3 → XP_015625872.1  histidine--tRNA ligase, chloroplastic/mitochondrial

    UniProtKB/TrEMBL
    A2X9R2, A3ABH0, Q6Z695
    Conserved Domains (1) summary
    PLN02530
    Location:2 → 487
    PLN02530; histidine-tRNA ligase
Nucleotide Protein
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