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LOC4330309 uncharacterized LOC4330309 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330309, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330309
Gene description
uncharacterized LOC4330309
Locus tag
OSNPB_020677800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 16.5), roots after flowering (RPKM 16.1) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28156178..28159683, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27667885..27671439, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330307 Neighboring gene zinc finger CCCH domain-containing protein 17-like Neighboring gene protein MAIN-LIKE 2-like Neighboring gene SPX domain-containing membrane protein Os02g45520-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small ribosomal subunit rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4330309
Names
Os02g0677800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    28156178..28159683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771458.3 → XP_015626944.1  uncharacterized protein LOC4330309

    Conserved Domains (3) summary
    PTZ00072
    Location:174 → 308
    PTZ00072; 40S ribosomal protein S13; Provisional
    cd00353
    Location:236 → 315
    Ribosomal_S15p_S13e; Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. ...
    pfam08069
    Location:174 → 226
    Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain

  2. XM_015771460.3 → XP_015626946.1  uncharacterized protein LOC4330309

    Conserved Domains (3) summary
    PTZ00072
    Location:174 → 308
    PTZ00072; 40S ribosomal protein S13; Provisional
    cd00353
    Location:236 → 315
    Ribosomal_S15p_S13e; Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. ...
    pfam08069
    Location:174 → 226
    Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain

  3. XM_015771459.3 → XP_015626945.1  uncharacterized protein LOC4330309

    Conserved Domains (3) summary
    PTZ00072
    Location:174 → 308
    PTZ00072; 40S ribosomal protein S13; Provisional
    cd00353
    Location:236 → 315
    Ribosomal_S15p_S13e; Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. ...
    pfam08069
    Location:174 → 226
    Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain
Nucleotide Protein
Heading Accession and Version

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