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LOC4329527 serine/threonine-protein kinase CTR1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329527, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4329527
Gene description
serine/threonine-protein kinase CTR1
Locus tag
OSNPB_020527600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0475F05.7
Expression
Broad expression in roots before flowering (RPKM 15.9), flowers (RPKM 7.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19801982..19810027, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19324232..19332174, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene DNA repair protein RAD5A Neighboring gene uncharacterized protein At4g22758 Neighboring gene heat stress transcription factor A-3-like Neighboring gene PAN domain-containing protein At5g03700 Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development. Wang Q, et al. J Exp Bot, 2013 Nov. PMID 24006427, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase CTR1
Names
Os02g0527600
P0458B05.27
putative CTR1-like protein kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    19801982..19810027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770883.3 → XP_015626369.1  serine/threonine-protein kinase CTR1 isoform X2

    UniProtKB/TrEMBL
    A0A0P0VJX9, B8AIY9
    Conserved Domains (3) summary
    cd13999
    Location:518 → 766
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
    pfam07714
    Location:512 → 766
    Pkinase_Tyr; Protein tyrosine kinase
    pfam14381
    Location:170 → 376
    EDR1; Ethylene-responsive protein kinase Le-CTR1

  2. XM_015770882.3 → XP_015626368.1  serine/threonine-protein kinase CTR1 isoform X1

    UniProtKB/TrEMBL
    B8AIY9, Q6H6Q5
    Conserved Domains (3) summary
    cd13999
    Location:520 → 768
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
    pfam07714
    Location:514 → 768
    Pkinase_Tyr; Protein tyrosine kinase
    pfam14381
    Location:170 → 376
    EDR1; Ethylene-responsive protein kinase Le-CTR1

RNA

  1. XR_010739362.1 RNA Sequence

  2. XR_010739361.1 RNA Sequence

  3. XR_003241054.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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