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EIF4A3A eukaryotic initiation factor 4A-III homolog A-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326580, updated on 16-Jul-2024

Summary

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Gene symbol
EIF4A3A
Gene description
eukaryotic initiation factor 4A-III homolog A-like
Locus tag
OSNPB_010639100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RH2; OsRH2; EIF4A3; OsJ_02769; eIF4A-III
Expression
Ubiquitous expression in flower buds (RPKM 41.9), leaves before flowering (RPKM 37.8) and 6 other tissues See more
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Genomic context

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See EIF4A3A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (26218396..26221923)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25636976..25640503)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene scopoletin glucosyltransferase Neighboring gene uncharacterized LOC107277790 Neighboring gene cinnamoyl-CoA reductase-like SNL6 Neighboring gene uncharacterized LOC4326582

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice. Huang CK, et al. BMC Plant Biol, 2016 Apr 12. PMID 27071313, Free PMC Article
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data show that the gene expression patterns OF DEAD box RNA helicases OsRH2 and OsRH34 were similar in various tissues, but the level of OsRH2 mRNA was about 58-fold higher than that of OsRH34 mRNA in seedlings.
    Title: Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic initiation factor 4A-III homolog A
Names
DEAD-box ATP-dependent RNA helicase 2
LOC_Os01g45190
P0004A09.21
P0696E01.42
eIF-4A-III
oseIF4AIIIa
putative nicotiana eukaryotic translation initiation factor 4A
NP_001384966.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398037.1 → NP_001384966.1  eukaryotic initiation factor 4A-III homolog A

    Status: VALIDATED

    Source sequence(s)
    AK073640, CB659504, CF308640
    UniProtKB/Swiss-Prot
    B7EMG9, Q5VNM3
    UniProtKB/TrEMBL
    B8AKV8
    Conserved Domains (1) summary
    PTZ00424
    Location:28 → 404
    PTZ00424; helicase 45; Provisional

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    26218396..26221923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5VNM3.1 GenPept UniProtKB/Swiss-Prot:Q5VNM3

Gene LinkOut

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Molecular Biology Databases
Research Materials