MMP16 matrix metallopeptidase 16 [Homo sapiens (human)] - Gene

Summary

Official Symbol: MMP16provided by HGNC
Official Full Name: matrix metallopeptidase 16provided by HGNC
Primary source: HGNC:HGNC:7162
See related: Ensembl:ENSG00000156103 MIM:602262; AllianceGenome:HGNC:7162
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: MMP-X2; C8orf57; MT-MMP2; MT-MMP3; MT3-MMP
Summary: Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease processes, such as arthritis and metastasis. Most MMP's are secreted as inactive proproteins which are activated when cleaved by extracellular proteinases. The encoded protein activates MMP2 by cleavage. This gene was once referred to as MT-MMP2, but was renamed as MT-MMP3 or MMP16. [provided by RefSeq, Oct 2010]
Expression: Biased expression in brain (RPKM 3.8), gall bladder (RPKM 1.9) and 12 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 8q21.3

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
110	current	GRCh38.p14 (GCF_000001405.40)	8	NC_000008.11 (88032011..88327483, complement)
110	current	T2T-CHM13v2.0 (GCF_009914755.1)	8	NC_060932.1 (89155362..89450838, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	8	NC_000008.10 (89044239..89339712, complement)

Chromosome 8 - NC_000008.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

LncRNA NEAT1 regulates MMP-16 by targeting miR-200a/b to aggravate inflammation in asthma.
Title: LncRNA NEAT1 regulates MMP-16 by targeting miR-200a/b to aggravate inflammation in asthma.
Changes in the expression of membrane type-matrix metalloproteinases genes (MMP14, MMP15, MMP16, MMP24) during treatment and their potential impact on the survival of patients with non-small cell lung cancer (NSCLC).
Title: Changes in the expression of membrane type-matrix metalloproteinases genes (MMP14, MMP15, MMP16, MMP24) during treatment and their potential impact on the survival of patients with non-small cell lung cancer (NSCLC).
Circular RNA hsa_circ_0002360 promotes non-small cell lung cancer progression through upregulating matrix metalloproteinase 16 and sponging multiple micorRNAs.
Title: Circular RNA hsa_circ_0002360 promotes non-small cell lung cancer progression through upregulating matrix metalloproteinase 16 and sponging multiple micorRNAs.
microRNA-4429-5p suppresses the malignant development of colon cancer by targeting matrix metalloproteinase 16.
Title: microRNA-4429-5p suppresses the malignant development of colon cancer by targeting matrix metalloproteinase 16.
A protective polymorphism in MMP16, improved blood gas levels, and chronic obstructive pulmonary diseases: Family and two population-based studies.
Title: A protective polymorphism in MMP16, improved blood gas levels, and chronic obstructive pulmonary diseases: Family and two population-based studies.
Association between MMP16 rs60298754 and clinical phenotypes of Parkinson's disease in southern Chinese.
Title: Association between MMP16 rs60298754 and clinical phenotypes of Parkinson's disease in southern Chinese.
LINC01121 induced intervertebral disc degeneration via modulating miR-150-5p/MMP16 axis.
Title: LINC01121 induced intervertebral disc degeneration via modulating miR-150-5p/MMP16 axis.
Role of lncRNA NEAT1 mediated by YY1 in the development of diabetic cataract via targeting the microRNA-205-3p/MMP16 axis.
Title: Role of lncRNA NEAT1 mediated by YY1 in the development of diabetic cataract via targeting the microRNA-205-3p/MMP16 axis.
Knockdown of MMP16 inhibits cell proliferation and invasion in chordoma in vitro.
Title: Knockdown of MMP16 inhibits cell proliferation and invasion in chordoma in vitro.
HOXA11-AS could promote renal cancer cells growth and invasion by modulating miR-146b-5p-MMP16 axis.
Title: HOXA11-AS promotes the growth and invasion of renal cancer by sponging miR-146b-5p to upregulate MMP16 expression.

Submit: New GeneRIF Correction See all GeneRIFs (36)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Biological insights from 108 schizophrenia-associated genetic loci. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide association analysis identifies 13 new risk loci for schizophrenia. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide association study identifies five new schizophrenia loci. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide association study identifies genetic loci associated with body mass index and high density lipoprotein-cholesterol levels during psychopharmacological treatment - a cross-sectional naturalistic study. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide meta-analysis identifies new susceptibility loci for migraine. EBI GWAS Catalog EBI GWAS CatalogPubMed
Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

AB021228 (e-PCR)
- UniSTS:163337

D5Wox36 (e-PCR)
- UniSTS:239940

RH121221 (e-PCR)
- UniSTS:138332

Mmp16 (e-PCR), detects polymorphism
- UniSTS:495993

A008T27 (e-PCR)
- UniSTS:62074

RH120085 (e-PCR)
- UniSTS:133515

D8S1400E (e-PCR)
- UniSTS:151196

D8S1404E (e-PCR)
- UniSTS:151198

D8S1425E (e-PCR)
- UniSTS:151214

WI-21150 (e-PCR)
- UniSTS:15287

A008X11 (e-PCR)
- UniSTS:59849

RH91779 (e-PCR)
- UniSTS:84947

RH120010 (e-PCR)
- UniSTS:133334

RH123289 (e-PCR)
- UniSTS:135666

MMP16_920 (e-PCR)
- UniSTS:277491

Homology

Homologs of the MMP16 gene: The MMP16 gene is conserved in chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, and frog.
Orthologs from Annotation Pipeline: 316 organisms have orthologs with human gene MMP16
Orthologs

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables enzyme activator activity	TAS Traceable Author Statement more info	PubMed
enables metalloaminopeptidase activity	IDA Inferred from Direct Assay more info	PubMed
enables metalloaminopeptidase activity	TAS Traceable Author Statement more info	PubMed
enables metalloendopeptidase activity	IBA Inferred from Biological aspect of Ancestor more info	PubMed
enables metalloendopeptidase activity	IDA Inferred from Direct Assay more info	PubMed
enables zinc ion binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
involved_in chondrocyte proliferation	IEA Inferred from Electronic Annotation more info
involved_in collagen catabolic process	IBA Inferred from Biological aspect of Ancestor more info	PubMed
involved_in craniofacial suture morphogenesis	IEA Inferred from Electronic Annotation more info
involved_in embryonic cranial skeleton morphogenesis	IEA Inferred from Electronic Annotation more info
involved_in endochondral ossification	IEA Inferred from Electronic Annotation more info
involved_in extracellular matrix organization	IBA Inferred from Biological aspect of Ancestor more info	PubMed
involved_in protein processing	IDA Inferred from Direct Assay more info	PubMed
involved_in protein processing	TAS Traceable Author Statement more info	PubMed
involved_in proteolysis	IDA Inferred from Direct Assay more info	PubMed
involved_in proteolysis	TAS Traceable Author Statement more info	PubMed
involved_in skeletal system development	IBA Inferred from Biological aspect of Ancestor more info	PubMed

Component	Evidence Code	Pubs
located_in Golgi lumen	TAS Traceable Author Statement more info
located_in cell surface	IEA Inferred from Electronic Annotation more info
located_in extracellular matrix	IEA Inferred from Electronic Annotation more info
located_in extracellular region	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info	PubMed
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed
located_in plasma membrane	TAS Traceable Author Statement more info

General protein information

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Preferred Names: matrix metalloproteinase-16

Names: MMP-16; MT-MMP 3; MT3MMP; MTMMP3; Putative transmembrane protein C8orf57; matrix metallopeptidase 16 (membrane-inserted); membrane-type matrix metalloproteinase 3; membrane-type-3 matrix metalloproteinase

NP_005932.2

EC 3.4.24.-

XP_024302922.1

EC 3.4.24.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_005941.5 → NP_005932.2 matrix metalloproteinase-16 precursor

See identical proteins and their annotated locations for NP_005932.2

Status: REVIEWED

Source sequence(s)

AC037450, AL832595, D83646, DA575789

Consensus CDS

CCDS6246.1

UniProtKB/Swiss-Prot

P51512, Q52H48

Related

ENSP00000286614.6, ENST00000286614.11

Conserved Domains (5) summary

PHA03247
Location:292 → 338

PHA03247; large tegument protein UL36; Provisional

cd00094
Location:340 → 532

HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...

pfam00413
Location:126 → 291

Peptidase_M10; Matrixin

pfam01471
Location:42 → 96

PG_binding_1; Putative peptidoglycan binding domain

pfam11857
Location:538 → 607

DUF3377; Domain of unknown function (DUF3377)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000008.11 Reference GRCh38.p14 Primary Assembly

Range

88032011..88327483 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_024447154.2 → XP_024302922.1 matrix metalloproteinase-16 isoform X1

Conserved Domains (4) summary

cd00094
Location:77 → 269

HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...

pfam11857
Location:274 → 344

DUF3377; Domain of unknown function (DUF3377)

cl26464
Location:29 → 75

Atrophin-1; Atrophin-1 family

cl27698
Location:1 → 28

Peptidase_M10; Matrixin

Alternate T2T-CHM13v2.0

Genomic

NC_060932.1 Alternate T2T-CHM13v2.0

Range

89155362..89450838 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_022564.3: Suppressed sequence

Description

NM_022564.3: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
NM_032297.1: Suppressed sequence

Description

NM_032297.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.