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LOC4324280 putative ubiquitin-conjugating enzyme E2 38 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324280, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4324280
Gene description
putative ubiquitin-conjugating enzyme E2 38
Locus tag
OSNPB_010232500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0702F03.1
Expression
Ubiquitous expression in roots before flowering (RPKM 24.8), roots after flowering (RPKM 20.6) and 6 other tissues See more
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Genomic context

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See LOC4324280 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7351755..7356342)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7340663..7345354)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein JINGUBANG Neighboring gene tRNase Z TRZ3, mitochondrial Neighboring gene histidinol dehydrogenase, chloroplastic-like Neighboring gene glycosyltransferase-like KOBITO 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ubiquitin-conjugating enzyme E2 24; putative ubiquitin-conjugating enzyme E2 38
Names
Os01g0232500
ubiquitin-conjugating enzyme -like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    7351755..7356342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766460.3 → XP_015621946.1  probable ubiquitin-conjugating enzyme E2 24 isoform X1

    UniProtKB/TrEMBL
    A2WMG0
    Conserved Domains (1) summary
    cd00195
    Location:200 → 327
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

  2. XM_015766462.3 → XP_015621948.1  putative ubiquitin-conjugating enzyme E2 38 isoform X3

    UniProtKB/TrEMBL
    A0A0P0V058, A2WMG0, Q5NAY5
    Conserved Domains (1) summary
    cd00195
    Location:185 → 312
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

  3. XM_015766461.3 → XP_015621947.1  putative ubiquitin-conjugating enzyme E2 38 isoform X2

    UniProtKB/TrEMBL
    A2WMG0
    Conserved Domains (1) summary
    cd00195
    Location:186 → 313
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
Nucleotide Protein
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