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LOC4324040 uncharacterized LOC4324040 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324040, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4324040
Gene description
uncharacterized LOC4324040
Locus tag
OSNPB_010506200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 8.2), roots after flowering (RPKM 6.5) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (18178126..18192801, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (17612306..17627033, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281700 Neighboring gene pentatricopeptide repeat-containing protein At5g11310, mitochondrial Neighboring gene uncharacterized LOC136355339 Neighboring gene uncharacterized LOC112939232

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4324040
Names
Os01g0506200
P0436D06.46
tetratricopeptide repeat domain 5-like protein
tetratricopeptide repeat protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    18178126..18192801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765643.3 → XP_015621129.1  uncharacterized protein LOC4324040

    UniProtKB/TrEMBL
    A0A0P0V343, A0A5S6R7D3, A0A9K3Y722, B8A8Y6, B9EX49, Q0JMG5, Q5QN89
    Conserved Domains (2) summary
    sd00006
    Location:114 → 142
    TPR; TPR repeat [structural motif]
    pfam16669
    Location:311 → 422
    TTC5_OB; Tetratricopeptide repeat protein 5 OB fold domain
Nucleotide Protein
Heading Accession and Version

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