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MAP1LC3A microtubule associated protein 1 light chain 3 alpha [ Gallus gallus (chicken) ]

Gene ID: 419142, updated on 17-Aug-2024

Summary

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Symbol
MAP1LC3Aprovided by CGNC
Full Name
microtubule associated protein 1 light chain 3 alphaprovided by CGNC
Primary source
CGNC:1345
See related
Ensembl:ENSGALG00010024665
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 20 NC_052551.1 (1728035..1741156, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 20 NC_052592.1 (1378073..1391194, complement)

Chromosome 20 - NC_052551.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 6 Neighboring gene matrix metallopeptidase 24 Neighboring gene microRNA 1453 Neighboring gene dynein light chain roadblock-type 1 Neighboring gene mannosidase, beta A, lysosomal-like 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
microtubule-associated proteins 1A/1B light chain 3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052551.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1728035..1741156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_417327.8 → XP_417327.3  microtubule-associated proteins 1A/1B light chain 3A

    UniProtKB/TrEMBL
    A0A1D5PFR7, A0A8V1A198
    Related
    ENSGALP00010036983.1, ENSGALT00010060223.1
    Conserved Domains (1) summary
    cd17234
    Location:4 → 120
    Ubl_ATG8_MAP1LC3A; ubiquitin-like (Ubl) domain found in microtubule associate protein 1 light chain 3A (MAP1LC3A)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052592.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1378073..1391194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040688401.2 → XP_040544335.1  microtubule-associated proteins 1A/1B light chain 3A

    UniProtKB/TrEMBL
    A0A1D5PFR7, A0A8V1A198
    Conserved Domains (1) summary
    cd17234
    Location:4 → 120
    Ubl_ATG8_MAP1LC3A; ubiquitin-like (Ubl) domain found in microtubule associate protein 1 light chain 3A (MAP1LC3A)
Nucleotide Protein
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