U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

KDM8 lysine demethylase 8 [ Gallus gallus (chicken) ]

Gene ID: 416583, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Symbol
KDM8provided by CGNC
Full Name
lysine demethylase 8provided by CGNC
Primary source
CGNC:4734
See related
Ensembl:ENSGALG00010017334
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
JMJD5
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (7285757..7296882)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (7281388..7292526)

Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101751944 Neighboring gene uncharacterized LOC107054584 Neighboring gene uncharacterized LOC112533452 Neighboring gene NSE1 homolog, SMC5-SMC6 complex component Neighboring gene microRNA 6548 Neighboring gene interleukin 4 receptor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lysine-specific demethylase 8; bifunctional peptidase and arginyl-hydroxylase JMJD5
Names
jumonji domain containing 5
lysine (K)-specific demethylase 8
XP_004945335.2
XP_025010992.2
XP_040539392.1
XP_040539393.1
XP_040539394.1
XP_414883.4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    7285757..7296882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004945278.5 → XP_004945335.2  bifunctional peptidase and arginyl-hydroxylase JMJD5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z1Y9
    Related
    ENSGALP00010024447.1, ENSGALT00010041808.1

  2. XM_025155224.3 → XP_025010992.2  bifunctional peptidase and arginyl-hydroxylase JMJD5 isoform X3

  3. XM_414883.8 → XP_414883.4  bifunctional peptidase and arginyl-hydroxylase JMJD5 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTT4
    Related
    ENSGALP00010024444.1, ENSGALT00010041803.1
    Conserved Domains (1) summary
    cl40423
    Location:288 → 398
    cupin_RmlC-like; RmlC-like cupin superfamily

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    7281388..7292526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040683458.2 → XP_040539392.1  bifunctional peptidase and arginyl-hydroxylase JMJD5 isoform X2

  2. XM_040683459.2 → XP_040539393.1  bifunctional peptidase and arginyl-hydroxylase JMJD5 isoform X3

  3. XM_040683460.2 → XP_040539394.1  bifunctional peptidase and arginyl-hydroxylase JMJD5 isoform X1

    Conserved Domains (1) summary
    cl40423
    Location:288 → 398
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.