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DNAJC9-AS1 DNAJC9 and MRPS16 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 414245, updated on 11-Dec-2021

Summary

Official Symbol
DNAJC9-AS1provided by HGNC
Official Full Name
DNAJC9 and MRPS16 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:31432
See related
Ensembl:ENSG00000227540 Ensembl:ENSG00000236756
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf103; bA537A6.3
Expression
Broad expression in testis (RPKM 4.1), thyroid (RPKM 1.0) and 23 other tissues See more
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Genomic context

See DNAJC9-AS1 in Genome Data Viewer
Location:
10q22.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (73247367..73276984)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (75007125..75036742)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 149 member B1 Neighboring gene eukaryotic translation initiation factor 4A2 pseudogene 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member C9 Neighboring gene mitochondrial ribosomal protein S16 Neighboring gene cilia and flagella associated protein 70 Neighboring gene RNA, U6 small nuclear 833, pseudogene Neighboring gene annexin A7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • DNAJC9 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038373.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains alternate 5' exon structure, compared to variant 1.
    Source sequence(s)
    AL512656, BC043233
    Related
    ENST00000440197.2
  2. NR_134458.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL512656, BC043233, HY014641
  3. NR_134459.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two 3' exons but contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    BC033983, BE672305, HY014641
    Related
    ENST00000457147.1
  4. NR_134460.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site in the 5' terminal exon, and lacks two 3' exons but instead contains two different 3' exons, compared to variant 1.
    Source sequence(s)
    AI598205, BE672305, BF511937, HY014641

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    73247367..73276984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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