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C6orf201 chromosome 6 open reading frame 201 [ Homo sapiens (human) ]

Gene ID: 404220, updated on 7-Jun-2020

Summary

Official Symbol
C6orf201provided by HGNC
Official Full Name
chromosome 6 open reading frame 201provided by HGNC
Primary source
HGNC:HGNC:21620
See related
Ensembl:ENSG00000185689
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
dJ1013A10.5
Expression
Broad expression in testis (RPKM 16.6), kidney (RPKM 7.3) and 24 other tissues See more
Orthologs

Genomic context

See C6orf201 in Genome Data Viewer
Location:
6p25.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (4079197..4130951)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (4079440..4131000)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene glutaredoxin 3 pseudogene 2 Neighboring gene pre-mRNA processing factor 4B Neighboring gene Sharpr-MPRA regulatory region 2502 Neighboring gene family with sequence similarity 217 member A Neighboring gene enoyl-CoA delta isomerase 2 Neighboring gene uncharacterized LOC107986559 Neighboring gene ECI2 divergent transcript Neighboring gene CRISPRi-validated cis-regulatory element chr6.285

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC87625

General protein information

Preferred Names
uncharacterized protein C6orf201
Names
protein MGC87625

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085401.2NP_001078870.1  uncharacterized protein C6orf201

    See identical proteins and their annotated locations for NP_001078870.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the supported protein.
    Source sequence(s)
    AK124114, AL033383, BC047663
    Consensus CDS
    CCDS43419.1
    UniProtKB/Swiss-Prot
    Q7Z4U5
    UniProtKB/TrEMBL
    B3KW47
    Related
    ENSP00000420610.1, ENST00000380175.9
    Conserved Domains (1) summary
    pfam15023
    Location:4102
    DUF4523; Protein of unknown function (DUF4523)

RNA

  1. NR_104463.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) includes an additional exon in both the central and 3' regions, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK124114, AL033383, BC047663, BC066986, BI459567
  2. NR_104464.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon in the 5' region but includes an additional exon in the 3' region, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AL033383, BC047663, BC066986
    Related
    ENST00000427996.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    4079197..4130951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017010861.1XP_016866350.1  uncharacterized protein C6orf201 isoform X1

    Conserved Domains (1) summary
    pfam15023
    Location:33105
    DUF4523; Protein of unknown function (DUF4523)
  2. XM_011514613.2XP_011512915.1  uncharacterized protein C6orf201 isoform X2

    See identical proteins and their annotated locations for XP_011512915.1

    UniProtKB/TrEMBL
    B4DXB2
    Conserved Domains (1) summary
    pfam15023
    Location:4102
    DUF4523; Protein of unknown function (DUF4523)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_206834.1: Suppressed sequence

    Description
    NM_206834.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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