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C5L36_0D04180 hypothetical protein [ Pichia kudriavzevii ]

Gene ID: 40385519, updated on 17-May-2024

Summary

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Gene symbol
C5L36_0D04180
Gene description
hypothetical protein
Locus tag
C5L36_0D04180
See related
FungiDB:C5L36_0D04180; VEuPathDB:C5L36_0D04180
Gene type
protein coding
RNA name
uncharacterized protein
RefSeq status
PROVISIONAL
Organism
Pichia kudriavzevii (strain: CBS573, type-material: type material of Candida krusei)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Pichiaceae; Pichia
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Genomic context

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See C5L36_0D04180 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_042509.1 (863553..866417)

Chromosome 4 - NC_042509.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042509.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein
XP_029323167.1
  • PKUD0D04180; similar to Saccharomyces cerevisiae YNL023C (FAP1); ancestral locus Anc_2.288

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_042509.1 Reference assembly

    Range
    863553..866417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029467307.1 → XP_029323167.1  uncharacterized protein C5L36_0D04180 [Pichia kudriavzevii]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2U9R8D4
    Conserved Domains (4) summary
    cd06008
    Location:404 → 451
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    cl00297
    Location:688 → 743
    R3H; R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich ...
    cl00770
    Location:864 → 939
    PSP1; PSP1 C-terminal conserved region
    cl17238
    Location:17 → 69
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
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