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LRMP lymphoid restricted membrane protein [ Homo sapiens (human) ]

Gene ID: 4033, updated on 11-Sep-2019

Summary

Official Symbol
LRMPprovided by HGNC
Official Full Name
lymphoid restricted membrane proteinprovided by HGNC
Primary source
HGNC:HGNC:6690
See related
Ensembl:ENSG00000118308 MIM:602003
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
JAW1
Summary
The protein encode dby this gene is expressed in a developmentally regulated manner in lymphoid cell lines and tissues. The protein is localized to the cytoplasmic face of the endoplasmic reticulum. [provided by RefSeq, Jul 2008]
Expression
Biased expression in lymph node (RPKM 77.5), appendix (RPKM 26.1) and 5 other tissues See more
Orthologs

Genomic context

See LRMP in Genome Data Viewer
Location:
12p12.1
Exon count:
24
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (25052228..25108335)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (25205181..25261269)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene brain protein I3 pseudogene 2 Neighboring gene chromosome 12 open reading frame 77 Neighboring gene uncharacterized LOC645177 Neighboring gene centromere protein U pseudogene 2 Neighboring gene cancer susceptibility 1 Neighboring gene electron transfer flavoprotein regulatory factor 1 Neighboring gene KRAS proto-oncogene, GTPase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

  • Immune System, organism-specific biosystem (from REACTOME)
    Immune System, organism-specific biosystemHumans are exposed to millions of potential pathogens daily, through contact, ingestion, and inhalation. Our ability to avoid infection depends on the adaptive immune system and during the first crit...
  • Innate Immune System, organism-specific biosystem (from REACTOME)
    Innate Immune System, organism-specific biosystemInnate immunity encompases the nonspecific part of immunity tha are part of an individual's natural biologic makeup
  • Neutrophil degranulation, organism-specific biosystem (from REACTOME)
    Neutrophil degranulation, organism-specific biosystemNeutrophils are the most abundant leukocytes (white blood cells), indispensable in defending the body against invading microorganisms. In response to infection, neutrophils leave the circulation and ...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
neutrophil degranulation TAS
Traceable Author Statement
more info
 
single fertilization IEA
Inferred from Electronic Annotation
more info
 
vesicle fusion TAS
Traceable Author Statement
more info
PubMed 
vesicle targeting TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
azurophil granule membrane TAS
Traceable Author Statement
more info
 
chromosome IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
integral component of membrane TAS
Traceable Author Statement
more info
PubMed 
integral component of plasma membrane TAS
Traceable Author Statement
more info
PubMed 
membrane HDA PubMed 
microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 
nuclear envelope IEA
Inferred from Electronic Annotation
more info
 
plasma membrane TAS
Traceable Author Statement
more info
 
spindle pole IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
lymphoid-restricted membrane protein
Names
protein Jaw1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001204126.2NP_001191055.1  lymphoid-restricted membrane protein isoform a

    See identical proteins and their annotated locations for NP_001191055.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1-13 all encode the same isoform (a).
    Source sequence(s)
    AC023510, AW206014, BC144164, DB135324
    Consensus CDS
    CCDS8701.1
    UniProtKB/Swiss-Prot
    Q12912
    Related
    ENSP00000450246.1, ENST00000547044.5
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein
  2. NM_001204127.2NP_001191056.1  lymphoid-restricted membrane protein isoform a

    See identical proteins and their annotated locations for NP_001191056.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1-13 all encode the same isoform (a).
    Source sequence(s)
    AC023510, AK303256, AW206014
    Consensus CDS
    CCDS8701.1
    UniProtKB/Swiss-Prot
    Q12912
    Related
    ENSP00000446496.1, ENST00000548766.5
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein
  3. NM_001366540.1NP_001353469.1  lymphoid-restricted membrane protein isoform a

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein
  4. NM_001366541.1NP_001353470.1  lymphoid-restricted membrane protein isoform a

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein
  5. NM_001366542.1NP_001353471.1  lymphoid-restricted membrane protein isoform a

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein
  6. NM_001366543.1NP_001353472.1  lymphoid-restricted membrane protein isoform a

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein
  7. NM_001366544.1NP_001353473.1  lymphoid-restricted membrane protein isoform a

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein
  8. NM_001366545.1NP_001353474.1  lymphoid-restricted membrane protein isoform a

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein
  9. NM_001366546.1NP_001353475.1  lymphoid-restricted membrane protein isoform a

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein
  10. NM_001366547.1NP_001353476.1  lymphoid-restricted membrane protein isoform a

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein
  11. NM_001366548.1NP_001353477.1  lymphoid-restricted membrane protein isoform b

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Conserved Domains (1) summary
    pfam05781
    Location:1425
    MRVI1; MRVI1 protein
  12. NM_001366549.1NP_001353478.1  lymphoid-restricted membrane protein isoform c

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Related
    ENSP00000444056.1, ENST00000536173.5
    Conserved Domains (1) summary
    pfam05781
    Location:1446
    MRVI1; MRVI1 protein
  13. NM_006152.4NP_006143.2  lymphoid-restricted membrane protein isoform a

    See identical proteins and their annotated locations for NP_006143.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1), as well as variants 2-13, encodes isoform a.
    Source sequence(s)
    AC023510, AW206014, BC126417, DB135324
    Consensus CDS
    CCDS8701.1
    UniProtKB/Swiss-Prot
    Q12912
    Related
    ENSP00000346442.3, ENST00000354454.7
    Conserved Domains (1) summary
    pfam05781
    Location:1499
    MRVI1; MRVI1 protein

RNA

  1. NR_159366.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC023510
  2. NR_159367.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC023510
    Related
    ENST00000361433.6
  3. NR_159368.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC023510
  4. NR_159369.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC023510

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    25052228..25108335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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