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Tigd4 tigger transposable element derived 4 [ Mus musculus (house mouse) ]

Gene ID: 403175, updated on 11-Apr-2024

Summary

Official Symbol
Tigd4provided by MGI
Official Full Name
tigger transposable element derived 4provided by MGI
Primary source
MGI:MGI:2685264
See related
Ensembl:ENSMUSG00000047819 AllianceGenome:MGI:2685264
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm418; C130063O11Rik
Summary
Predicted to enable DNA binding activity. Predicted to be active in nucleus. Is expressed in diaphragm; tongue muscle; and vertebral axis musculature. Orthologous to human TIGD4 (tigger transposable element derived 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

Location:
3 F1; 3 37.7 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (84500881..84504339)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (84593574..84597032)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor interacting protein 1 Neighboring gene high mobility group box 3 pseudogene Neighboring gene predicted gene, 35410 Neighboring gene predicted gene, 46836 Neighboring gene STARR-seq mESC enhancer starr_08087 Neighboring gene STARR-seq mESC enhancer starr_08088 Neighboring gene STARR-positive B cell enhancer mm9_chr3:84457727-84458028 Neighboring gene STARR-positive B cell enhancer ABC_E1263 Neighboring gene transmembrane protein 154 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:84485598-84485953

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables molecular_function ND
No biological Data available
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
tigger transposable element-derived protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207278.2NP_997161.1  tigger transposable element-derived protein 4

    See identical proteins and their annotated locations for NP_997161.1

    Status: VALIDATED

    Source sequence(s)
    AC102224
    Consensus CDS
    CCDS17439.1
    UniProtKB/Swiss-Prot
    Q8BUZ3
    Related
    ENSMUSP00000052320.4, ENSMUST00000062623.4
    Conserved Domains (3) summary
    pfam03221
    Location:84143
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:1667
    HTH; Helix-turn-helix domains
    cl21549
    Location:211375
    rve; Integrase core domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    84500881..84504339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)